Recode v. 2.0 / Database of translational recoding events.
Details for "r200429"
| Accession number | r200429 [export] |
| Locus name | selH |
| Recode1 name | selH_s_euk_drer |
| Description | function unknown |
| Recode status | Validated |
Organism
| Genomic class | Eukaryota (Chromosome) |
| Organism | Danio rerio [details] |
Sequence
Recoding event
| Event type | Selenocysteine (position: 1239) |
| Description | selenocysteine incorporation. |
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAG ACAACATCTT GTACATCTGA
TCTGACATTC CGTGGACATG CCTCGCCATA CATCGGCACA CAAGCGAAAG CCATCGACGC CCAGACGCAG
ATCTCCCCCT GCATCACTAC CACCGCCGGC AGGGTCAAGA ACCCGCCGCC ACAGCGGACC ATCCGGATCA
TCGCCGCGCA AGAAACACAA ATTTCGCCCT GGCACCCGAG CACTCATGGA GATACGCAAG TATCAGAAGT
CGACCGGTCT TCTGCTGCGC AAGGCTCCGT TTTCACGACT GGTGCGGGAG GTGTGTCAGA TGTTCAGCCG
AGAGCACATG ATGTGGCAAG GATATGCTTT AATGGCTCTA CAGGAGGCTG CAGAGGCGTT CATGGTTCGT
CTGTTTTCTG ATGCCAACCT CTGTGCCATT CACGCCAAGA GAGTGACGTT GTTCCCACGT GACATACAAC
TCGCCCGGAG GATCAGAGGC GTTGAACACA TGTAAAACTG CATGTCAGGA TTCAATCAAT TCCTTTCAGT
CTTGCTGATG TAAGGACGCA TTATATACTA TAATTTTTTT ATTATTACAG GCCTCAAATC AAAATGTTAA
GATAGTTGCA TATGTTCAGT CTAATAAACC AGATGTTTGT ATGAAATTAA AGTGTGCTGG GACACTTTTA
AAAAAATTCT AGTATTGTAA TATAAAACAT TTTATTCTGT GAGGTAAAAC TGCAAACATT GTGTTCCTTT
TCAGTTTTTT TAATAATATA CCGATATGTT GTAAATAATC TAGATGGGAT ACAGCTGCGG ATACTCGCGT
CATTACTGTG ACGCTACAAT AATAAATTAC GTCACTGTTA GGGTTATGCT TTAAAAAAAT ACAATTTGAT
GGCTAATTTA ATAAAACCAG GTGTAATTAC TGTTTTACAT TAATGTGAGT GTTGGGGGGT AAACGTTAAT
AAGGTACAAT CGATGTGTGA TTTAATAATT CAATAATTCT CGTTAACTTC CGACTGCAAC TGTATCCCTT
CCAGCAATCC CCGCGAAAAA CTTCTCACGT GTGTTGTTGC TGCTGCAATG GCGACTCGAG GCAAGTCAGC
TCGCAAGCGA AAGGCGGATT CAGACGAAAA AGAAAAGCTT GACGATGCCA AGAAAGAAAA GCTTGAGGAT
AAGGATGAAG AAACAGGACT GAGGGTGGTC ATCGAGCATT GTAAGAGCTG ACGGGTTTAC GGGCGCAACG
CGGTCGTCGT GCGGGAAGCT CTTGCAGATT CGCACCCTGA ACTCAAAGTG ATGATAAACC CGCACAATCC
CCGGAGAAAC AGCTTTGAAA TCACGCTGAT GGACGGAGAA AGAGCGGATG TTTTGTGGTC CGGCATTAAA
AAGGGTCCTC CACGCAAACT CAAGTTCCCT GAGCCTGCTG AAGTGGTGAC CGCCCTGAAA CAAGCGCTGG
AGAAAGAGTA AATACTGTCT GCTTTCTGTG CTCCTGGACA CTGGATGCAT TTATGATGTG AATGGACTAA
TGGGAAAATC TCCCCGTCTG TTTACTGATG ACCGACTCTG CTGTTCTGGA CTGGAATGCT GACTTTGCCT
CGTTTCCTCT GTTAACCATT GTTCAGTTCT GCTGTCACAT GATTAGTGTT AATTTGCCTT TATATGTCTT
GTGTCTAGTG TTTGTGTCAT TCACCTTTTA ACTGTTTGAA TGGCACAAAT AAAGCAACTA TTTCTTGAAA
AAAAAAAAAA AAAA
Product
| Product | selH |
| Description | Selenoprotein H; function unknown |
| Modifications | 1239..1241,aa:Sec |
MATRGKSARK RKADSDEKEK LDDAKKEKLE DKDEETGLRV VIEHCKSURV YGRNAVVVRE ALADSHPELK
VMINPHNPRR NSFEITLMDG ERADVLWSGI KKGPPRKLKF PEPAEVVTAL KQALEKE
Publication
- Thisse C, Degrave A, Kryukov GV, Gladyshev VN, Obrecht-Pflumio S, Krol A, Thisse B, Lescure A. (2003) Spatial and temporal expression patterns of selenoprotein genes during embryogenesis in zebrafish. Gene Expr Patterns. 3(4):525-532. [abstract]