Recode v. 2.0 / Database of translational recoding events.
Details for "r200856"
| Accession number | r200856 [export] |
| Locus name | AZ |
| Description | Ornithine decarboxylase antizyme AZ |
| Recode status | Reviewed |
Organism
| Genomic class | Eukaryota (Chromosome) |
| Organism | Amblyomma variegatum [details] |
Sequence
Recoding event
| Event type | +1 Frameshifting (position: 186) |
| Description | AZ ORF0: 4.2e-22 ORF1: 3.7e-95 |
TCCACGCCAC CCTTTGGGGC GGTATGAATC GTACGGCTGA GATAACCTTA TCAAGTTTAA GTAGTAAAGA
GACCGCCATG CCAGGTGTTT GTAGTAATTT TAGTAGTAGT TGTCCGGACA ACACCATGAG GACGCTGCTG
CGCCACTACT GTATCTCTCT GGGTGCTGGG CCTCTGTGGT GCTCCTGATG CGCCCCATGC CGCCGACGTG
TCGCTGTCAA GCACAGGAGG CAGCGGCGTG GGGTCTCTGA AAGCGCCCCC TGTGGACAAC TCCCATGTTC
GAAAGGGAGG AGAGCTGTTT GCGCGGCAGT GGAGCGAGGA AGCGGTGCGG CTGACGTTCC GCTGCCGTCT
GACGGAGCAG ACGGAGGTGA ACTGGGAAAC TGTGCTGTGC GAGGGCAGGC TGTATGTGCA GCTGCCGTCC
TGCGTGCTGC CAGACGGCTC CCGCGAAGCC TTTGTCACAC TCCTCGAGTT TGCTGAGGAG CAGCTGGGTT
GCACCCATGT CCTGGTCTTC TTCAACAAGG ACCGCAATGA CAGAGCTGGC ATTGTGCGCA CGTTCATGTT
CCTGGGCTTC ACTGTCCTGG CCCCGGGACA TCCCCTTGTG CCACAATCCA CTTCTGAAGG GCTCCTGTAC
ATGGCTTACA CCATCGAGTG AGACATGGCG GACACCACCG ACAACCCACT GCGCTTCCTG GCTCTACTGC
TGCACCAATA GTTTCTTCGT TTTGTTCCTT TTTCTGCAAC TCTTTCGGGA GGAGA
Product
| Product | OAZA_ORF1 |
| Description | Ornithine decarboxylase antizyme AZ |
| Modifications | 185..187:ribosomal_frameshift |
MNRTAEITLS SLSSKETAMP GVCSNFSSSC PDNTMRTLLR HYCISLGAGP LWCSDAPHAA DVSLSSTGGS
GVGSLKAPPV DNSHVRKGGE LFARQWSEEA VRLTFRCRLT EQTEVNWETV LCEGRLYVQL PSCVLPDGSR
EAFVTLLEFA EEQLGCTHVL VFFNKDRNDR AGIVRTFMFL GFTVLAPGHP LVPQSTSEGL LYMAYTIE
Publication
- Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]